Oh, I forgot to add a thanks to all of those who like my theory, and I didn't mean that ALL 200 would be used but that they may be used, or the more likely candidates, I may not have been clear on that.
Muldfeld, I will apologize in advance if my theory turns out to be true I don't mean to spoil your fun just throwing out some ideas!

I am thinking maybe it was coincidence though, about Isabelle and Kyle. That Imroth guy said that they were against Collier right? Isabelle was a baby at the time and they had to send Matthew as an effort to control Isabelle after she grew up so isn't it possible that without his interaction she would have turned out OK, and that what she told Richard was the truth, she just showed him the fake vision because of the feelings she and her parents felt towards Jordan in the first place. The good side used the opportunity to take Jordan out so that they could give him the "vision of the future" and bring him back looking like a messiah in order to further the cause for promicin distribution. Maybe the "conduit" they installed in Kyle to be used as a mouthpiece from the future was there the whole time and they were able to tap into and used it to control him during the black outs. I wonder though if the future realized that he would distribute it with the high fatality rate or if they were expecting him to work on it until it was safer...
Promicinjunkie, you throw out some good points as well! It is hard to say but I am leaning towards my own theory for the time being... not that I am biased or anything

If nothing else then because, other than Kyle, that would be the most likely reason Tom would take the shot.
Edited to say that I don't know it was the good or bad side that caused Kyle to assassinate Jordan but I do think that it was the good side that brought Jordan back... I think...